BIOND LAB

The concept of ecosystem services (ES), first introduced in 1970’s, gained mainstream attention in 2005, when the Millennium Ecosystem Assessment formally proposed a definition for it. In spite of this attention, many aspects about the ES concept have remained controversial to date, i.e., their classification, value, generation, link to human well-being, and supportive role as management tool. This review explores the knowledge status of ecosystem services, focusing on those services generated in coastal and marine environments (CMES). A knowledge gap and an underdevelopment of tools to assess CMES is evident in the literature, especially when compared to the progress done in the assessment of land ES. Possible explanations reside on the yet small proportion that the research done on CMES represents for the ecosystem service framework (ESF), in part due to the intrinsic challenges of researching the marine environment, also due to the limited availability of spatial data on marine ecosystems. Nevertheless, the ES concept is getting more attention toward policy-makers and stakeholders, leading to the implementation of an ecosystem services approach (ESA) to the management and protection of CMES. Six lessons are rescued from the literature to improve the ESA: (1) integration of the ESA in a science-policy process; (2) more simplicity for the CMES prediction models; (3) move toward empowering of stakeholders; (4) integration of the value pluralism of CMES with less focus on money; (5) the link of ES to Human Well-being must not been forgotten; and (6) communication of results and social literacy are key.

The Jacobian matrix of a dynamical system describes its response to perturbations. Conversely one can estimate the Jacobian matrix by carefully monitoring how the system responds to environmental noise. Here we present a closed form analytical solution for the calculation of a system's Jacobian from a timeseries. Being able to access a system's Jacobian enables us to perform a broad range of mathematical analyses by which deeper insights into the system can be gained. Here we consider in particular the computation of the leading Jacobian eigenvalue as an early warning signal for critical transition. To illustrate this approach we apply it to ecological meta-foodweb models, which are strongly nonlinear dynamical multi-layer networks. Our analysis shows that accurate results can be obtained, although the data demand of the method is still high.

The past decade has seen growing support for the critical brain hypothesis, i.e., the possibility that the brain could operate at or very near a critical state between two different dynamical regimes. Such critical states are well-studied in different disciplines, therefore there is potential for a continued transfer of knowledge. Here, I revisit foundations of bifurcation theory, the mathematical theory of transitions. While the mathematics is well-known it's transfer to neural dynamics leads to new insights and hypothesis.

The rise in the availability of bacterial genomes defines a need for synthesis: abstracting from individual taxa, to see larger patterns of bacterial lifestyles across systems. A key concept for such synthesis in ecology is the niche, the set of capabilities that enables a population's persistence and defines its impact on the environment. The set of possible niches forms the niche space, a conceptual space delineating ways in which persistence in a system is possible. Here we use manifold learning to map the space of metabolic networks representing thousands of bacterial genera. The results reveal a metabolic niche space with a complex branching geometry, whose branches constitute major strategies spanning life in different habitats and hosts. We further demonstrate that communities from similar ecosystem types map to characteristic regions of this new functional coordinate system, permitting ecological descriptions of microbiomes in terms of large scale metabolic roles that may be filled.