Biodiversity, Networks & Data

[1]

Aggregation of monitoring datasets for functional diversity estimation

P Carrasco, J Antonucci, J Massing et al.

to appear in Front. Eco. Evo.

[2]

Dissimilarity analysis based on diffusion maps

J Gault, J Freund, H Hillebrand et al.

Oikos 2023, e10249-10, 2023

[3]

Adaptive dynamical networks

R Berner, T Gross, C Kuehn et al.

Physics Reports 1031, 1-59, 2023

[4]

Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community

JC Massing, AK Fahimipour, C Bunse et al.

mSystems 8, 28-23, 2023

[5]

Critical Drift in a Neuro-Inspired Adaptive Network

S Sormunen, T Gross and J Saramäki

Phys. Rev. Lett. 130, 188401, 2023

[6]

Trait reconstruction and estimation of functional diversity from ecolocical monitoring data

A Ryabov, B Blasius, H Hillebrand et al.

PNAS 119, e2118156119, 2022

[7]

Governing Change: A Dynamical Systems Approach to Understanding the Stability of Environmental Governance

N Molla, J DeIonno, T Gross et al.

Earth Sys. Dyn. 13, 1677-1688, 2022

[8]

Sharp thresholds limit the benefit of defector avoidance in cooperation on networks

AK Fahimipour, F Zeng, M Homer et al.

PNAS 119, e2120120119, 2022

[9]

Network Robustness Revisited

T Gross and L Barth

Frontiers in Physics 10, 823564-16, 2022

[10]

Master stability functions for metacommunities with two types of habitats

A Krauß, T Gross and B Drossel

Phys. Rev. E 105, 044310, 2022

[11]

Generalized Structural Kinetic Modeling: A Survey and Guide

JC Massing and T Gross

Front. Mol. Biosci. 9, 825052-19, 2022

[12]

Toward a Solution of the “Peruvian Puzzle”: Pelagic Food-Web Structure and Trophic Interactions in the Northern Humboldt Current Upwelling System Off Peru

JC Massing, A Schukat, H Auel et al.

to appear in Front. Mar. Sci.

[13]

The Knowledge Status of Coastal and Marine Ecosystem Services - Challenges, Limitations and Lessons Learned From the Application of the Ecosystem Services Approach in Management

PM Carrasco De La Cruz

Front. Mar. Sci. 8, 519, 2021

[14]

A closed form for Jacobian reconstruction from time series and its application as an early warning signal in network dynamics

E Barter, A Brechtel, B Drossel et al.

Proc. R. Soc. A. 477, 20200742, 2021

[15]

Not one, but many critical states: A dynamical systems perspective

T Gross

Front. Neural Circuits 15, 614268-7, 2021

[16]

Revealing environmentally driven population dynamics of an Arctic diatom using a novel microsatellite PoolSeq barcoding approach

KKE Wolf, CJM Hoppe, F Leese et al.

Environ Microbiol 23, 3809-3824, 2021

[17]

Modern models of trophic meta-communities

T Gross, KT Allhoff, B Blasius et al.

Phil. Trans. R. Soc. B 375, 20190455, 2020

[18]

Wireless localization with diffusion maps

A Ghafourian, O Georgiou, E Barter et al.

Sci Rep 10, 20655, 2020

[19]

Mapping the bacterial metabolic niche space

AK Fahimipour and T Gross

Nature Commun. 11, 4887, 2020

[20]

Diverse interactions and ecosystem engineering can stabilize community assembly

JD Yeakel, MM Pires, MAM de Aguiar et al.

Nature Commun. 11, 3307, 2020

[21]

Far-ranging generalist top predators enhance the stability of meta-foodwebs

A Brechtel, T Gross and B Drossel

Sci Rep 9, 12268, 2019

[22]

Identifying dynamical instabilities in supply networks using generalized modeling

G Demirel, BL MacCarthy, D Ritterskamp et al.

J Oper Manag 65, 136-159, 2019

[23]

Quantitative analysis of approaches to group marking

H Harvey, J Keen, C Robinson et al.

Assessment & Evaluation in Higher Education 44, 1133-1147, 2019

[24]

Manifold cities: social variables of urban areas in the UK

E Barter and T Gross

Proc. R. Soc. A. 475, 20180615, 2019

[25]

Impact of cyber-invasive species on a large ecological network

A Doizy, E Barter, J Memmott et al.

Sci Rep 8, 13245, 2018

[26]

Introduction to dynamics of manufacturing supply networks

T Gross, BL MacCarthy and N Wildgoose

Chaos 28, 093111, 2018

[27]

Revealing instabilities in a generalized triadic supply network: A bifurcation analysis

D Ritterskamp, G Demirel, BL MacCarthy et al.

Chaos 28, 073103, 2018

[28]

Master stability functions reveal diffusion-driven pattern formation in networks

A Brechtel, P Gramlich, D Ritterskamp et al.

Phys. Rev. E 97, 032307, 2018

[29]

Eco-evolutionary dynamics, density-dependent dispersal and collective behaviour: implications for salmon metapopulation robustness

JD Yeakel, JP Gibert, T Gross et al.

Phil. Trans. R. Soc. B 373, 20170018, 2018

[30]

Spatial effects in meta-foodwebs

E Barter and T Gross

Sci Rep 7, 9980, 2017

[31]

Dynamics of epidemic diseases on a growing adaptive network

G Demirel, E Barter and T Gross

Sci Rep 7, 42352, 2017

[32]

Topological stability criteria for networking dynamical systems with Hermitian Jacobian

AL Do, S Boccaletti, J Epperlein et al.

Eur. J. Appl. Math 27, 888-903, 2016

[33]

Adaptive network models of collective decision making in swarming systems

L Chen, C Huepe and T Gross

Phys. Rev. E 94, 022415, 2016

[34]

Network inoculation: Heteroclinics and phase transitions in an epidemic model

H Yang, T Rogers and T Gross

Chaos 26, 083116, 2016

[35]

Design of Self-Organizing Networks: Creating Specified Degree Distributions

H Silk, M Homer and T Gross

IEEE Trans. Netw. Sci. Eng. 3, 147-158, 2016

[36]

The influence of dispersal on a predator–prey system with two habitats

P Gramlich, SJ Plitzko, L Rudolf et al.

Journal of Theoretical Biology 398, 150-161, 2016

[37]

Temporal and structural heterogeneities emerging in adaptive temporal networks

T Aoki, LEC Rocha and T Gross

Phys. Rev. E 93, 040301, 2016

[38]

Impact of dispersal on the stability of metapopulations

E Tromeur, L Rudolf and T Gross

Journal of Theoretical Biology 392, 1-11, 2016

[39]

Meta-food-chains as a many-layer epidemic process on networks

E Barter and T Gross

Phys. Rev. E 93, 022303, 2016

[40]

Early warning signs for saddle-escape transitions in complex networks

C Kuehn, G Zschaler and T Gross

Sci Rep 5, 13190, 2015

[41]

Large epidemic thresholds emerge in heterogeneous networks of heterogeneous nodes

H Yang, M Tang and T Gross

Sci Rep 5, 13122, 2015

[42]

Fusion leads to effective segregation of damage during cell division: An analytical treatment

SJ Lade, M Coelho, IM Tolić et al.

Journal of Theoretical Biology 378, 47-55, 2015

[43]

A general consumer-resource population model

KD Lafferty, G DeLeo, CJ Briggs et al.

Science 349, 854-857, 2015

[44]

Mesoscopic structures and the Laplacian spectra of random geometric graphs

A Nyberg, T Gross and KE Bassler

J. Comp. Networks 3, 543-551, 2015

[45]

Exploring the adaptive voter model dynamics with a mathematical triple jump

H Silk, G Demirel, M Homer et al.

New J. Phys. 16, 093051, 2014

[46]

Collapse of an ecological network in Ancient Egypt

JD Yeakel, MM Pires, L Rudolf et al.

PNAS 111, 14472-14477, 2014

[47]

Self-organized criticality as a fundamental property of neural systems

J Hesse and T Gross

Front. Syst. Neurosci. 8, 166, 2014

[48]

Fusion of protein aggregates facilitates asymmetric damage segregation

M Coelho, SJ Lade, S Alberti et al.

PLoS Biol 12, e1001886, 2014

[49]

Moment-closure approximations for discrete adaptive networks

G Demirel, F Vazquez, GA Böhme et al.

Physica D: Nonlinear Phenomena 267, 68-80, 2014

[50]

How to predict community responses to perturbations in the face of imperfect knowledge and network complexity

H Aufderheide, L Rudolf, T Gross et al.

Proc. R. Soc. B. 280, 20132355, 2013

[51]

Emergence and persistence of diversity in complex networks

GA Böhme

Eur. Phys. J. Spec. Top. 222, 3089-3169, 2013

[52]

Meso-scale obstructions to stability of 1D center manifolds for networks of coupled differential equations with symmetric Jacobian

J Epperlein, A Do, T Gross et al.

Physica D: Nonlinear Phenomena 261, 1-7, 2013

[53]

Shared rewarding overcomes defection traps in generalized volunteer's dilemmas

X Chen, T Gross and U Dieckmann

Journal of Theoretical Biology 335, 13-21, 2013

[54]

Fission Yeast Does Not Age under Favorable Conditions, but Does So after Stress

M Coelho, A Dereli, A Haese et al.

Current Biology 23, 1844-1852, 2013

[55]

Amplitude death in networks of delay-coupled delay oscillators

JM Höfener, GC Sethia and T Gross

Phil. Trans. R. Soc. A. 371, 20120462, 2013

[56]

Consensus time and conformity in the adaptive voter model

T Rogers and T Gross

Phys. Rev. E 88, 030102, 2013

[57]

Modeling complex systems with adaptive networks

H Sayama, I Pestov, J Schmidt et al.

Computers & Mathematics with Applications 65, 1645-1664, 2013

[58]

Analytical investigation of self-organized criticality in neural networks

F Droste, A Do and T Gross

J. R. Soc. Interface. 10, 20120558, 2013

[59]

Nonlocal generalized models of predator-prey systems

C Kuehn and T Gross

Discrete & Continuous Dynamical Systems - B 18, 693-720, 2013

[60]

A Mathematical Framework for Critical Transitions: Normal Forms, Variance and Applications

C Kuehn

J Nonlinear Sci 23, 457-510, 2012

[61]

Engineering mesoscale structures with distinct dynamical implications

A Do, J Höfener and T Gross

New J. Phys. 14, 115022, 2012

[62]

Largenet2: an object-oriented programming library for simulating large adaptive networks

G Zschaler and T Gross

Bioinformatics 29, 277-278, 2012

[63]

Mesoscale symmetries explain dynamical equivalence of food webs

H Aufderheide, L Rudolf and T Gross

New J. Phys. 14, 105014, 2012

[64]

Adaptive-network models of collective dynamics

G Zschaler

Eur. Phys. J. Spec. Top. 211, 1-101, 2012

[65]

Fragmentation transitions in multistate voter models

GA Böhme and T Gross

Phys. Rev. E 85, 066117, 2012

[66]

Hunting French ducks in a noisy environment

N Berglund, B Gentz and C Kuehn

Journal of Differential Equations 252, 4786-4841, 2012

[67]

Graphical notation reveals topological stability criteria for collective dynamics in complex networks

A Do, S Boccaletti and T Gross

Phys. Rev. Lett. 108, 194102, 2012

[68]

Dynamical analysis of evolution equations in generalized models

C Kuehn, S Siegmund and T Gross

IMA Journal of Applied Mathematics 78, 1051-1077, 2012

[69]

Early fragmentation in the adaptive voter model on directed networks

G Zschaler, GA Böhme, M Seißinger et al.

Phys. Rev. E 85, 046107, 2012

[70]

Coordination, Differentiation and Fairness in a Population of Cooperating Agents

A Do, L Rudolf and T Gross

Games 3, 30-40, 2012

[71]

Early Warning Signals for Critical Transitions: A Generalized Modeling Approach

SJ Lade and T Gross

PLoS Comput Biol 8, e1002360, 2012

[72]

Constructing and sampling directed graphs with given degree sequences

H Kim, CI Del Genio, KE Bassler et al.

New J. Phys. 14, 023012, 2012

[73]

Failure of Adaptive Self-Organized Criticality during Epileptic Seizure Attacks

C Meisel, A Storch, S Hallmeyer-Elgner et al.

PLoS Comput Biol 8, e1002312, 2012

[74]

Uninformed Individuals Promote Democratic Consensus in Animal Groups

ID Couzin, CC Ioannou, G Demirel et al.

Science 334, 1578-1580, 2011

[75]

Computation and visualization of bifurcation surfaces

D Stiefs, T Gross, R Steuer et al.

Int. J. Bifurcation Chaos 18, 2191-2206, 2011

[76]

All scale-free networks are sparse

CI Del Genio, T Gross and KE Bassler

Phys. Rev. Lett. 107, 178701, 2011

[77]

Emergent bipartiteness in a society of knights and knaves

CI Del Genio and T Gross

New J. Phys. 13, 103038, 2011

[78]

On decomposing mixed-mode oscillations and their return maps

C Kuehn

Chaos 21, 033107, 2011

[79]

Adaptive-network models of swarm dynamics

C Huepe, G Zschaler, A Do et al.

New J. Phys. 13, 073022, 2011

[80]

Stability of networks of delay-coupled delay oscillators

JM Höfener, GC Sethia and T Gross

EPL 95, 40002, 2011

[81]

General analysis of mathematical models for bone remodeling

M Zumsande, D Stiefs, S Siegmund et al.

Bone 48, 910-917, 2011

[82]

Cyclic dominance in adaptive networks

G Demirel, R Prizak, PN Reddy et al.

Eur. Phys. J. B 84, 541-548, 2011

[83]

Analytical calculation of fragmentation transitions in adaptive networks

GA Böhme and T Gross

Phys. Rev. E 83, 035101, 2011

[84]

Generalized modeling of ecological population dynamics

JD Yeakel, D Stiefs, M Novak et al.

Theor Ecol 4, 179-194, 2011

[85]

Consequences of fluctuating group size for the evolution of cooperation

A Brännström, T Gross, B Blasius et al.

J. Math. Biol. 63, 263-281, 2010

[86]

Food Quality in Producer‐Grazer Models: A Generalized Analysis

D Stiefs, G van Voorn, B Kooi et al.

The American Naturalist 176, 367-380, 2010

[87]

A homoclinic route to asymptotic full cooperation in adaptive networks and its failure

G Zschaler, A Traulsen and T Gross

New J. Phys. 12, 093015, 2010

[88]

Bifurcations and chaos in the MAPK signaling cascade

M Zumsande and T Gross

Journal of Theoretical Biology 265, 481-491, 2010

[89]

Patterns of cooperation: fairness and coordination in networks of interacting agents

A Do, L Rudolf and T Gross

New J. Phys. 12, 063023, 2010

[90]

Dynamical phase coexistence: A simple solution to the “savanna problem”

F Vazquez, C López, JM Calabrese et al.

Journal of Theoretical Biology 264, 360-366, 2010

[91]

Recurrence networks—a novel paradigm for nonlinear time series analysis

RV Donner, Y Zou, JF Donges et al.

New J. Phys. 12, 033025, 2010

[92]

Vertical distribution and composition of phytoplankton under the influence of an upper mixed layer

AB Ryabov, L Rudolf and B Blasius

Journal of Theoretical Biology 263, 120-133, 2010

[93]

Ambiguities in recurrence-based complex network representations of time series

RV Donner, Y Zou, JF Donges et al.

Phys. Rev. E 81, 015101, 2010

[94]

Weighted trade network in a model of preferential bipartite transactions

A Chakraborty and SS Manna

Phys. Rev. E 81, 016111, 2010

[95]

Adaptive self-organization in a realistic neural network model

C Meisel and T Gross

Phys. Rev. E 80, 061917, 2009

[96]

Branching process in a stochastic extremal model

SS Manna

Phys. Rev. E 80, 021132, 2009

[97]

Generalized Models Reveal Stabilizing Factors in Food Webs

T Gross, L Rudolf, SA Levin et al.

Science 325, 747-750, 2009

[98]

The invisible niche: Weakly density-dependent mortality and the coexistence of species

T Gross, AM Edwards and U Feudel

Journal of Theoretical Biology 258, 148-155, 2009

[99]

Evidence of chaos in eco-epidemic models

D Stiefs, E Venturino and U Feudel

Mathematical Biosciences and Engineering 6, 855-871, 2009

[100]

Local dynamical equivalence of certain food webs

T Gross and U Feudel

Ocean Dynamics 59, 417-427, 2008

[101]

Robust oscillations in SIS epidemics on adaptive networks: Coarse-graining by automated moment closure

T Gross and IG Kevrekidis

Europhys. Lett. 82, 38004, 2008

[102]

Stabilization due to predator interference: comparison of different analysis approaches

GAK van Voorn, D Stiefs, T Gross et al.

Mathematical Biosciences and Engineering 5, 567-583, 2008

[103]

Adaptive coevolutionary networks: a review

T Gross and B Blasius

J. R. Soc. Interface. 5, 259-271, 2007

[104]

Instabilities in spatially extended predator–prey systems: Spatio-temporal patterns in the neighborhood of Turing–Hopf bifurcations

M Baurmann, T Gross and U Feudel

Journal of Theoretical Biology 245, 220-229, 2007

[105]

From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle

R Steuer, AN Nesi, AR Fernie et al.

Bioinformatics 23, 1378-1385, 2007

[106]

Seasonal Forcing Drives Spatio-TemporalPattern Formation in Rabies Epidemics

N von Festenberg, T Gross and B Blasius

Mat. Mod. Nat. Phen. 2, 63-73, 2007

[107]

Structural kinetic modeling of metabolic networks

R Steuer, T Gross, J Selbig et al.

PNAS 103, 11868-11873, 2006

[108]

Epidemic Dynamics on an Adaptive Network

T Gross, CJ Dommar D’Lima and B Blasius

Phys. Rev. Lett. 96, 208701, 2006

[109]

Generalized models as a universal approach to the analysis of nonlinear dynamical systems

T Gross and U Feudel

Phys. Rev. E 73, 016205, 2006

[110]

Long food chains are in general chaotic

T Gross, W Ebenhöh and U Feudel

Oikos 109, 135-144, 2005

[111]

Analytical search for bifurcation surfaces in parameter space

T Gross and U Feudel

Physica D: Nonlinear Phenomena 195, 292-302, 2004

[112]

Enrichment and foodchain stability: the impact of different forms of predator–prey interaction

T Gross, W Ebenhöh and U Feudel

Journal of Theoretical Biology 227, 349-358, 2004